The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.

نویسندگان

  • Weston B Struwe
  • Sanjay Agravat
  • Kiyoko F Aoki-Kinoshita
  • Matthew P Campbell
  • Catherine E Costello
  • Anne Dell
  • Ten Feizi
  • Stuart M Haslam
  • Niclas G Karlsson
  • Kay-Hooi Khoo
  • Daniel Kolarich
  • Yan Liu
  • Ryan McBride
  • Milos V Novotny
  • Nicolle H Packer
  • James C Paulson
  • Erdmann Rapp
  • Rene Ranzinger
  • Pauline M Rudd
  • David F Smith
  • Michael Tiemeyer
  • Lance Wells
  • William S York
  • Joseph Zaia
  • Carsten Kettner
چکیده

The minimum information required for a glycomics experiment (MIRAGE) project was established in 2011 to provide guidelines to aid in data reporting from all types of experiments in glycomics research including mass spectrometry (MS), liquid chromatography, glycan arrays, data handling and sample preparation. MIRAGE is a concerted effort of the wider glycomics community that considers the adaptation of reporting guidelines as an important step towards critical evaluation and dissemination of datasets as well as broadening of experimental techniques worldwide. The MIRAGE Commission published reporting guidelines for MS data and here we outline guidelines for sample preparation. The sample preparation guidelines include all aspects of sample generation, purification and modification from biological and/or synthetic carbohydrate material. The application of MIRAGE sample preparation guidelines will lead to improved recording of experimental protocols and reporting of understandable and reproducible glycomics datasets.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data

MIRAGE (Minimum Information Required for A Glycomics Experiment) is an initiative that was created by experts in the fields of glycobiology, glycoanalytics and glycoinformatics to produce guidelines for reporting results from the diverse types of experiments and analyses used in structural and functional studies of glycans in the scientific literature. As a sequel to the guidelines for sample p...

متن کامل

MIRAGE: The minimum information required for a glycomics experiment

The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with th...

متن کامل

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data.

The MIRAGE guidelines are being developed in response to a critical need in the glycobiology community to clarify glycoanalytic results so that they are more readily evaluated (in terms of their scope and depth) and to facilitate the reproduction of important results in the laboratory. The molecular and biological complexity of the glycosylation process makes thorough reporting of the results o...

متن کامل

High-Throughput Analysis and Automation for Glycomics Studies

This review covers advances in analytical technologies for high-throughput (HTP) glycomics. Our focus is on structural studies of glycoprotein glycosylation to support biopharmaceutical realization and the discovery of glycan biomarkers for human disease. For biopharmaceuticals, there is increasing use of glycomics in Quality by Design studies to help optimize glycan profiles of drugs with a vi...

متن کامل

Semantic Web for Translational Biomedicine: Two Pilot Experiments

Semantic Web technologies (i.e., OWL, RDF and reasoning services) play an increasingly important role in biomedical data integration and represent an enabling technology for translational medicine. We conducted two pilot experiments to illustrate the use of these technologies for integrating genotype and phenotype information in glycomics, and gene and pathway information in the domain of nicot...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Glycobiology

دوره 26 9  شماره 

صفحات  -

تاریخ انتشار 2016